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Nature Computational Science|January 4, 2024
Accelerating minimap2 for long-read sequencing applications on modern CPUsSaurabh Kalikar, Chirag Jain, Md Vasimuddin, et al.Bioinformatics (Oxford, England)|February 19, 2026
Accelerating minimap2 for whole-genome alignmentGhanshyam Chandra, Md Vasimuddin, Sanchit Misra, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|October 10, 2015
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ CoprocessorSanchit Misra, Kiran Pamnany, Srinivas AluruBioinformatics (Oxford, England)|March 9, 2023
Coverage-preserving sparsification of overlap graphs for long-read assemblyChirag JainJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|October 30, 2023
Gap-Sensitive Colinear Chaining Algorithms for Acyclic Pangenome GraphsGhanshyam Chandra, Chirag JainWorld Neurosurgery|August 10, 2024
C1-C2 Fixation for Chiari with Syringomyelia Associated with Atlantoaxial Instability, Atlantooccipital Assimilation and an Anomalous Vertebral Artery CourseChirag Jain, Nupur PruthiBioinformatics (Oxford, England)|November 20, 2010
Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencingSanchit Misra, Ankit Agrawal, Wei-keng Liao, et al.BMC Bioinformatics|November 5, 2016
muBLASTP: database-indexed protein sequence search on multicore CPUsJing Zhang, Sanchit Misra, Hao Wang, et al.American Journal of Human Genetics|May 27, 2025
Toward whole-genome inference of polygenic scores with fast and memory-efficient algorithmsShadi Zabad, Chirayu Anant Haryan, Simon Gravel, et al.Algorithms for Molecular Biology : AMB|June 30, 2026
Haplotype-aware long-read error correctionParvesh Barak, Daniel Gibney, Chirag JainPageof 9