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Plos Computational Biology|April 26, 2008
Implementing arithmetic and other analytic operations by transcriptional regulationSean M Cory, Theodore J PerkinsAnnals of the New York Academy of Sciences|October 16, 2007
The gap gene system of Drosophila melanogaster: model-fitting and validationTheodore J PerkinsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|January 9, 2015
Learning a cost function for microscope image segmentationSharmin Nilufar, Theodore J PerkinsBioinformatics (Oxford, England)|July 4, 2009
Statistical lower bounds on protein copy number from fluorescence expression imagesLee Zamparo, Theodore J PerkinsScientific Reports|January 17, 2024
Empirical Bayes single nucleotide variant-calling for next-generation sequencing dataAli Karimnezhad, Theodore J PerkinsBMC Genomics|December 15, 2010
Functional data analysis for identifying nonlinear models of gene regulatory networksGeorg Summer, Theodore J PerkinsFrontiers in Physiology|June 2, 2011
Maximum probability reaction sequences in stochastic chemical kinetic systemsMaryam Salehi, Theodore J PerkinsPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|April 3, 2012
Neural population densities shape network correlationsJérémie Lefebvre, Theodore J PerkinsBMC Proceedings|February 26, 2014
Adaptive bandwidth kernel density estimation for next-generation sequencing dataParameswaran Ramachandran, Theodore J PerkinsIEEE/ACM Transactions on Computational Biology and Bioinformatics|February 13, 2010
A trade-off between sample complexity and computational complexity in learning Boolean networks from time-series dataTheodore J Perkins, Michael T HallettPageof 9