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Science (New York, N.Y.)|October 12, 2019
Global trends in antimicrobial resistance in animals in low- and middle-income countriesThomas P Van Boeckel, João Pires, Reshma Silvester, et al.
Plos Computational Biology|June 2, 2012
Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptaseRafal Mostowy, Roger D Kouyos, Ilka Hoof, et al.
BMC Bioinformatics|August 11, 2023
estimateR: an R package to estimate and monitor the effective reproductive numberJérémie Scire, Jana S Huisman, Ana Grosu, et al.
Plos Computational Biology|March 14, 2012
Inferring epidemic contact structure from phylogenetic treesGabriel E Leventhal, Roger Kouyos, Tanja Stadler, et al.
The Journal of Infectious Diseases|November 19, 2003
Emergence of minor populations of human immunodeficiency virus type 1 carrying the M184V and L90M mutations in subjects undergoing structured treatment interruptionsKarin J Metzner, Sebastian Bonhoeffer, Marek Fischer, et al.
Antimicrobial Agents and Chemotherapy|May 29, 2014
Antagonism between bacteriostatic and bactericidal antibiotics is prevalentPaolo S Ocampo, Viktória Lázár, Balázs Papp, et al.
Plasmid|March 10, 2022
Estimating plasmid conjugation rates: A new computational tool and a critical comparison of methodsJana S Huisman, Fabienne Benz, Sarah J N Duxbury, et al.
Epidemics|May 17, 2022
Applying mixture model methods to SARS-CoV-2 serosurvey data from GenevaJudith A Bouman, Sarah Kadelka, Silvia Stringhini, et al.
The ISME Journal|November 5, 2020
Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivoFabienne Benz, Jana S Huisman, Erik Bakkeren, et al.
Plos Pathogens|February 21, 2018
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamicsDenise Kühnert, Roger Kouyos, George Shirreff, et al.
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