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Genome Biology|September 8, 2022
Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2Jamshed Khan, Marek Kokot, Sebastian Deorowicz, et al.
Bioinformatics (Oxford, England)|April 12, 2026
MDCompress: better, faster compression of molecular dynamics simulation trajectoriesMarek Kokot, Amitava Roy, Travis J Wheeler, et al.
Bioinformatics (Oxford, England)|March 23, 2026
FFC: A Scalable FASTA CompressorSzymon Grabowski, Tomasz M Kowalski, Robert Susik
Biorxiv : the Preprint Server for Biology|March 30, 2023
SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing readsMarek Kokot, Roozbeh Dehghannasiri, Tavor Baharav, et al.
Bioinformatics (Oxford, England)|July 10, 2018
Kmer-db: instant evolutionary distance estimationSebastian Deorowicz, Adam Gudys, Maciej Dlugosz, et al.
Current Opinion in Structural Biology|April 3, 2023
Towards the accurate alignment of over a million protein sequences: Current state of the artLuisa Santus, Edgar Garriga, Sebastian Deorowicz, et al.
Nature Biotechnology|September 23, 2024
Scalable and unsupervised discovery from raw sequencing reads using SPLASH2Marek Kokot, Roozbeh Dehghannasiri, Tavor Baharav, et al.
NAR Genomics and Bioinformatics|October 24, 2024
Graphite: painting genomes using a colored de Bruijn graphRick Beeloo, Aldert L Zomer, Sebastian Deorowicz, et al.
Nucleic Acids Research|December 3, 2011
miRNEST database: an integrative approach in microRNA search and annotationMichał Wojciech Szcześniak, Sebastian Deorowicz, Jakub Gapski, et al.
Plos Genetics|October 17, 2015
Inter-population Differences in Retrogene Loss and Expression in HumansMichał Kabza, Magdalena Regina Kubiak, Agnieszka Danek, et al.
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