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Journal of Proteome Research|October 24, 2017
PhoStar: Identifying Tandem Mass Spectra of Phosphorylated Peptides before Database SearchSebastian Dorl, Stephan Winkler, Karl Mechtler, et al.Journal of Proteome Research|January 23, 2023
MS Ana: Improving Sensitivity in Peptide Identification with Spectral Library SearchSebastian Dorl, Stephan Winkler, Karl Mechtler, et al.Rapid Communications in Mass Spectrometry : RCM|March 24, 2021
MS Amanda 2.0: Advancements in the standalone implementationViktoria Dorfer, Marina Strobl, Stephan Winkler, et al.Journal of Proteome Research|June 5, 2018
CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time PredictionViktoria Dorfer, Sergey Maltsev, Stephan Winkler, et al.Journal of Proteome Research|April 14, 2021
MS Annika: A New Cross-Linking Search EngineGeorg J Pirklbauer, Christian E Stieger, Manuel Matzinger, et al.Journal of Proteome Research|June 10, 2014
MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectraViktoria Dorfer, Peter Pichler, Thomas Stranzl, et al.Journal of Proteome Research|August 11, 2023
MS Annika 2.0 Identifies Cross-Linked Peptides in MS2-MS3-Based Workflows at High Sensitivity and SpecificityMicha J Birklbauer, Manuel Matzinger, Fränze Müller, et al.Nature Communications|November 10, 2025
Breaking barriers in crosslinking mass spectrometry with enhanced throughput and sensitivity using Orbitrap AstralFränze Müller, Micha J Birklbauer, Julia Bubis, et al.Communications Chemistry|December 20, 2024
Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complexMicha J Birklbauer, Fränze Müller, Sowmya Sivakumar Geetha, et al.Journal of Proteomics|April 8, 2017
Proceedings of the EuBIC Winter School 2017Sander Willems, David Bouyssié, Matthieu David, et al.Pageof 25