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Algorithms for Molecular Biology : AMB|April 26, 2016
Sparse RNA folding revisited: space-efficient minimum free energy structure predictionSebastian Will, Hosna JabbariBioinformatics (Oxford, England)|April 22, 2026
Spark: Sparse Hierarchical Energy Minimization for Scalable Prediction of RNA PseudoknotsMateo Gray, Sebastian Will, Hosna JabbariAlgorithms for Molecular Biology : AMB|March 3, 2024
SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle considerationMateo Gray, Sebastian Will, Hosna JabbariBioinformatics (Oxford, England)|June 6, 2018
Knotty: efficient and accurate prediction of complex RNA pseudoknot structuresHosna Jabbari, Ian Wark, Carlo Montemagno, et al.Bioinformatics (Oxford, England)|December 19, 2024
CParty: hierarchically constrained partition function of RNA pseudoknotsMateo Gray, Luke Trinity, Ulrike Stege, et al.Plos One|April 4, 2024
Unveiling hidden structural patterns in the SARS-CoV-2 genome: Computational insights and comparative analysisAlison Ziesel, Hosna JabbariBMC Bioinformatics|June 3, 2014
A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structuresHosna Jabbari, Anne CondonPlos One|July 1, 2025
Structural impact of synonymous mutations in six SARS-CoV-2 Variants of ConcernAlison Ziesel, Hosna JabbariJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 4, 2008
Novel and efficient RNA secondary structure prediction using hierarchical foldingHosna Jabbari, Anne Condon, Shelly ZhaoCurrent Protocols|February 13, 2023
Pseudoknots in RNA Structure PredictionAndrew Hollar, Hunter Bursey, Hosna JabbariPageof 10