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Plos Computational Biology|September 22, 2021
Incorporating metadata in HIV transmission network reconstruction: A machine learning feasibility assessmentSepideh Mazrouee, Susan J Little, Joel O WertheimIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 14, 2021
ARHap: Association Rule Haplotype PhasingSepideh MazroueePlos One|November 25, 2011
Using HIV transmission networks to investigate community effects in HIV prevention trialsJoel O Wertheim, Sergei L Kosakovsky Pond, Susan J Little, et al.Scientific Reports|November 10, 2022
Impact of molecular sequence data completeness on HIV cluster detection and a network science approach to enhance detectionSepideh Mazrouee, Camden J Hallmark, Ricardo Mora, et al.Bioinformatics (Oxford, England)|August 28, 2014
FastHap: fast and accurate single individual haplotype reconstruction using fuzzy conflict graphsSepideh Mazrouee, Wei WangIEEE/ACM Transactions on Computational Biology and Bioinformatics|July 25, 2018
PolyCluster: Minimum Fragment Disagreement Clustering for Polyploid PhasingSepideh Mazrouee, Wei WangAIDS (London, England)|September 24, 2016
Concurrency and HIV transmission network characteristics among MSM with recent HIV infectionHeather A Pines, Joel O Wertheim, Lin Liu, et al.Journal of Acquired Immune Deficiency Syndromes (1999)|September 29, 2015
Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996-2013Theppharit Panichsillapakit, Davey M Smith, Joel O Wertheim, et al.Plos One|June 23, 2010
The re-emergence of H1N1 influenza virus in 1977: a cautionary tale for estimating divergence times using biologically unrealistic sampling datesJoel O WertheimPageof 32