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Molecular Biology and Evolution|June 16, 2026
Accessible and Robust Machine Learning Approaches to Improve the Opsin Genotype-Phenotype MapSeth A Frazer, Todd H OakleyGigascience|October 26, 2024
Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)Seth A Frazer, Mahdi Baghbanzadeh, Ali Rahnavard, et al.Scientific Reports|November 7, 2025
deepBreaks identifies and prioritizes genotype-phenotype associations using machine learningMahdi Baghbanzadeh, Tyson Dawson, Bahar Sayoldin, et al.Integrative and Comparative Biology|July 21, 2025
Cnidarian eyes as a meta-model to explore evolutionary repeatability over deep timeTodd H OakleyDevelopmental Biology|September 20, 2017
Furcation and fusion: The phylogenetics of evolutionary noveltyTodd H OakleyIntegrative and Comparative Biology|June 18, 2011
On homology of arthropod compound eyesTodd H OakleyIntegrative and Comparative Biology|July 18, 2024
Building, Maintaining, and (re-)Deploying Genetic Toolkits during Convergent EvolutionTodd H OakleyMolecular Phylogenetics and Evolution|May 17, 2008
Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea)Oive Tinn, Todd H OakleyThe Journal of Experimental Biology|May 22, 2015
Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoidesM Desmond Ramirez, Todd H OakleyJournal of Molecular Evolution|October 16, 2004
Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceansTodd H Oakley, Daniel R HuberPageof 9