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Systematic Biology|November 1, 2016
Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies CoalescentSha Zhu, James H DegnanTheoretical Population Biology|March 23, 2011
Clades, clans, and reciprocal monophyly under neutral evolutionary modelsSha Zhu, James H Degnan, Mike SteelBMC Bioinformatics|September 17, 2015
Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species treesSha Zhu, James H Degnan, Sharyn J Goldstien, et al.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 21, 2013
Evaluating variations on the STAR algorithm for relative efficiency and sample sizes needed to reconstruct species treesJames H DegnanSystematic Biology|May 31, 2018
Modeling Hybridization Under the Network Multispecies CoalescentJames H DegnanBioinformatics (Oxford, England)|May 31, 2022
Trying out a million genes to find the perfect pair with RTISTGleb Zhelezov, James H DegnanBioinformatics (Oxford, England)|July 2, 2020
PRANC: ML species tree estimation from the ranked gene trees under coalescenceAnastasiia Kim, James H DegnanMolecular Phylogenetics and Evolution|April 8, 2021
Heuristics for unrooted, unranked, and ranked anomaly zones under birth-death modelsAnastasiia Kim, James H DegnanTheoretical Population Biology|May 23, 2012
Multiple merger gene genealogies in two species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescentsBjarki Eldon, James H DegnanPageof 36