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Methods (San Diego, Calif.)|May 10, 2024
MLm5C: A high-precision human RNA 5-methylcytosine sites predictor based on a combination of hybrid machine learning modelsHiroyuki Kurata, Md Harun-Or-Roshid, Md Mehedi Hasan, et al.Journal of Cheminformatics|August 20, 2025
xBitterT5: an explainable transformer-based framework with multimodal inputs for identifying bitter-taste peptidesNguyen Doan Hieu Nguyen, Nhat Truong Pham, Duong Thanh Tran, et al.Methods (San Diego, Calif.)|December 9, 2021
StackDPPIV: A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptidesPhasit Charoenkwan, Chanin Nantasenamat, Md Mehedi Hasan, et al.IEEE Journal of Biomedical and Health Informatics|May 23, 2025
XMolCap: Advancing Molecular Captioning Through Multimodal Fusion and Explainable Graph Neural NetworksDuong Thanh Tran, Nguyen Doan Hieu Nguyen, Nhat Truong Pham, et al.Cell Host & Microbe|September 16, 2016
Signal Integration by the IκB Protein Pickle Shapes Drosophila Innate Host DefenseOtto Morris, Xi Liu, Celia Domingues, et al.Briefings in Bioinformatics|December 9, 2021
Accelerating bioactive peptide discovery via mutual information-based meta-learningWenjia He, Yi Jiang, Junru Jin, et al.Journal of Ginseng Research|May 11, 2026
GinDB-AI: An integrated ginsenoside database and AI-driven platform for multidimensional information and biological activity predictionNguyen Doan Hieu Nguyen, Vinoth Kumar Sangaraju, Duong Thanh Tran, et al.Journal of Ginseng Research|July 3, 2026
Corrigendum to "GinDB-AI: An integrated database of Panax-derived compounds and an AI-driven platform for multidimensional information and biological activity prediction" [J Ginseng Res 50/3 (2026) 100986]Nguyen Doan Hieu Nguyen, Vinoth Kumar Sangaraju, Duong Thanh Tran, et al.Plant Communications|May 1, 2026
DeepTYLCV: An interpretable and experimentally validated AI model for predicting virulence of different tomato yellow leaf curl virus strainsNattanong Bupi, Hariharan Sangaraju, Duong Thanh Tran, et al.Journal of Molecular Biology|February 3, 2025
ERNIE-ac4C: A Novel Deep Learning Model for Effectively Predicting N4-acetylcytidine SitesRonglin Lu, Jianbo Qiao, Kefei Li, et al.Pageof 15