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Biorxiv : the Preprint Server for Biology|February 12, 2026
Natural language-based representation and modeling of RBP bindingShaimae Elhajjajy, Zhiping WengHepatology Communications|September 27, 2023
Beyond genome-wide association studies: Investigating the role of noncoding regulatory elements in primary sclerosing cholangitisHenry E Pratt, Tong Wu, Shaimae Elhajjajy, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
SPARK: in silico simulations for benchmarking nascent RNA sequencing experimentsEzequiel Calvo-Roitberg, Jesse W Lehman, Edric Tam, et al.Proteins|October 28, 2003
Atomic contact vectors in protein-protein recognitionJulian Mintseris, Zhiping WengProteins|April 16, 2003
A novel shape complementarity scoring function for protein-protein dockingRong Chen, Zhiping WengBriefings in Bioinformatics|December 3, 2015
Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing dataJunko Tsuji, Zhiping WengGenome Informatics. International Conference on Genome Informatics|February 16, 2005
Optimizing protein representations with information theoryJulian Mintseris, Zhiping WengProteins|January 25, 2008
A combination of rescoring and refinement significantly improves protein docking performanceBrian Pierce, Zhiping WengProteins|March 22, 2007
ZRANK: reranking protein docking predictions with an optimized energy functionBrian Pierce, Zhiping WengProteins|December 21, 2004
FAST: a novel protein structure alignment algorithmJianhua Zhu, Zhiping WengPageof 34