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Physical Biology|January 28, 2020
Widespread non-modular overlapping codes in the coding regionsShaked Bergman, Tamir TullerPlos Computational Biology|June 7, 2024
Strong association between genomic 3D structure and CRISPR cleavage efficiencyShaked Bergman, Tamir TullerNPJ Systems Biology and Applications|September 3, 2024
Codon usage and expression-based features significantly improve prediction of CRISPR efficiencyShaked Bergman, Tamir TullerBioinformatics (Oxford, England)|December 15, 2020
New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding regionShaked Bergman, Alon Diament, Tamir TullerGenome Medicine|December 23, 2024
A tool for CRISPR-Cas9 sgRNA evaluation based on computational models of gene expressionShai Cohen, Shaked Bergman, Nicolas Lynn, et al.Trends in Biotechnology|July 13, 2023
Fighting the battle against evolution: designing genetically modified organisms for evolutionary stabilityMatan Arbel-Groissman, Itamar Menuhin-Gruman, Doron Naki, et al.Science Advances|October 1, 2025
AI-directed gene fusing prolongs the evolutionary half-life of synthetic gene circuitsItamar Menuhin-Gruman, Matan Arbel-Groissman, Doron Naki, et al.Genome Biology|October 7, 2025
Silent mutations in coding regions of Hepatitis C virus affect patterns of HCV RNA structures and attenuate viral replication and pathogenesisRoba Dabour, Shaked Bergman, Zohar Zafrir, et al.Methods in Molecular Biology (Clifton, N.J.)|March 12, 2024
The Causes for Genomic Instability and How to Try and Reduce Them Through Rational Design of Synthetic DNAMatan Arbel-Groissman, Itamar Menuhin-Gruman, Hader Yehezkeli, et al.Mobile Genetic Elements|October 22, 2011
Codon bias, tRNA pools and horizontal gene transferTamir TullerPageof 17