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ACS Central Science|February 27, 2023
Thermal Half-Lives of Azobenzene Derivatives: Virtual Screening Based on Intersystem Crossing Using a Machine Learning PotentialSimon Axelrod, Eugene Shakhnovich, Rafael Gómez-BombarelliJournal of Chemical Information and Modeling|September 6, 2023
Mapping the Space of Photoswitchable Ligands and Photodruggable Proteins with Computational ModelingSimon Axelrod, Eugene Shakhnovich, Rafael Gómez-BombarelliProceedings of the National Academy of Sciences of the United States of America|April 12, 2002
A structure-based method for derivation of all-atom potentials for protein foldingEdo Kussell, Jun Shimada, Eugene I ShakhnovichMolecular Biology and Evolution|October 15, 2013
Contribution of selection for protein folding stability in shaping the patterns of polymorphisms in coding regionsAdrian W R Serohijos, Eugene I ShakhnovichCurrent Opinion in Structural Biology|June 22, 2014
Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population geneticsAdrian W R Serohijos, Eugene I ShakhnovichPhysical Review Letters|October 4, 2003
Equilibrium distribution of mutators in the single fitness peak modelEmmanuel Tannenbaum, Eric J Deeds, Eugene I ShakhnovichBiorxiv : the Preprint Server for Biology|March 31, 2025
Few-Shot Viral Variant Detection via Bayesian Active Learning and BiophysicsMarian Huot, Dianzhuo Wang, Jiacheng Liu, et al.Genome Informatics. International Conference on Genome Informatics|December 20, 2005
Assessing transcription factor motif drift from noisy decoy sequencesTimothy E Reddy, Charles DeLisi, Boris E ShakhnovichProtein Science : a Publication of the Protein Society|May 4, 2000
Analysis of knowledge-based protein-ligand potentials using a self-consistent methodJ Shimada, A V Ishchenko, E I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|January 16, 2008
Universality and diversity of folding mechanics for three-helix bundle proteinsJae Shick Yang, Stefan Wallin, Eugene I ShakhnovichPageof 47