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Plos Computational Biology|May 16, 2007
Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sitesTimothy E Reddy, Charles DeLisi, Boris E ShakhnovichGenome Research|March 3, 2005
Prokaryotic phylogenies inferred from protein structural domainsEric J Deeds, Hooman Hennessey, Eugene I ShakhnovichBiophysical Journal|August 29, 2020
Effect of Protein Structure on Evolution of Cotranslational FoldingVictor Zhao, William M Jacobs, Eugene I ShakhnovichPharmaceuticals (Basel, Switzerland)|June 28, 2023
Pharmacogenetic Testing for the Pediatric Gastroenterologist: Actionable Drug-Gene Pairs to KnowTracy Sandritter, Rachel Chevalier, Rebecca Abt, et al.Proceedings. Biological Sciences|February 16, 2018
Trade-offs between microbial growth phases lead to frequency-dependent and non-transitive selectionMichael Manhart, Bharat V Adkar, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|April 8, 2003
Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinasesLewyn Li, Eugene I Shakhnovich, Leonid A MirnyThe Journal of Chemical Physics|August 17, 2011
Sequence correlations shape protein promiscuityDavid B Lukatsky, Ariel Afek, Eugene I ShakhnovichJournal of Molecular Biology|April 6, 2011
Multi-scale sequence correlations increase proteome structural disorder and promiscuityAriel Afek, Eugene I Shakhnovich, David B LukatskyJournal of Chemical Information and Modeling|June 17, 2009
FOG: Fragment Optimized Growth algorithm for the de novo generation of molecules occupying druglike chemical spacePeter S Kutchukian, David Lou, Eugene I ShakhnovichNature Structural Biology|March 31, 2000
Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleusL Li, L A Mirny, E I ShakhnovichPageof 47