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Plos Computational Biology|April 24, 2015
Thermal stabilization of dihydrofolate reductase using monte carlo unfolding simulations and its functional consequencesJian Tian, Jaie C Woodard, Andrew Whitney, et al.Proceedings of the National Academy of Sciences of the United States of America|September 13, 2007
Robust protein protein interactions in crowded cellular environmentsEric J Deeds, Orr Ashenberg, Jaline Gerardin, et al.Physical Review Letters|October 2, 2009
Thymic selection of T-cell receptors as an extreme value problemAndrej Kosmrlj, Arup K Chakraborty, Mehran Kardar, et al.Proteins|August 31, 2000
Comparison of two optimization methods to derive energy parameters for protein folding: perceptron and Z scoreM Vendruscolo, L A Mirny, E I Shakhnovich, et al.International Journal of Molecular Sciences|August 27, 2013
Assessing the effect of loop mutations in the folding space of β2-microglobulin with molecular dynamics simulationsSílvia G Estácio, Eugene I Shakhnovich, Patrícia F N FaíscaPlos Computational Biology|May 14, 2016
Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable ModelsHugo Jacquin, Amy Gilson, Eugene Shakhnovich, et al.Biorxiv : the Preprint Server for Biology|November 26, 2025
CASPULE: A computational tool to study sticker spacer polymer condensatesAniruddha Chattaraj, David S Kanovich, Srivastav Ranganathan, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Constrained Evolutionary Funnels Shape Viral Immune EscapeMarian Huot, Dianzhuo Wang, Eugene Shakhnovich, et al.Proceedings of the National Academy of Sciences of the United States of America|April 15, 2026
Constrained evolutionary funnels shape viral immune escapeMarian Huot, Dianzhuo Wang, Eugene Shakhnovich, et al.Plos Computational Biology|May 14, 2026
CASPULE: A computational tool to study sticker spacer polymer condensatesAniruddha Chattaraj, David S Kanovich, Srivastav Ranganathan, et al.Pageof 47