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Biorxiv : the Preprint Server for Biology|March 27, 2026
Phase diagrams for biophysical fitness landscape designVaibhav Mohanty, Eugene I ShakhnovichPhysical Review Letters|October 26, 2002
Glassy dynamics of side-chain ordering in a simple model of protein foldingEdo Kussell, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|October 19, 2001
Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulationsL Li, E I ShakhnovichPhysical Review Letters|June 13, 2009
Slowly replicating lytic viruses: pseudolysogenic persistence and within-host competitionJingshan Zhang, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|March 5, 2004
Error and repair catastrophes: A two-dimensional phase diagram in the quasispecies modelEmmanuel Tannenbaum, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|July 13, 2004
Host-parasite coevolution and optimal mutation rates for semiconservative quasispeciesYisroel Brumer, Eugene I ShakhnovichPhysical Review. E|April 3, 2019
Mutation rate variability as a driving force in adaptive evolutionDalit Engelhardt, Eugene I ShakhnovichPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|May 21, 2005
Selective advantage for conservative virusesYisroel Brumer, Eugene I ShakhnovichProceedings of the National Academy of Sciences of the United States of America|June 28, 2007
Defining functional distance using manifold embeddings of gene ontology annotationsGilad Lerman, Boris E ShakhnovichPageof 47