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Computational and Structural Biotechnology Journal|July 27, 2022
Assessing comparative importance of DNA sequence and epigenetic modifications on gene expression using a deep convolutional neural networkShang Gao, Jalees Rehman, Yang DaiGenome Research|July 1, 2021
A Bayesian inference transcription factor activity model for the analysis of single-cell transcriptomesShang Gao, Yang Dai, Jalees RehmanNature Communications|February 22, 2025
Unveiling the cell-type-specific landscape of cellular senescence through single-cell transcriptomics using SenePyMark A Sanborn, Xinge Wang, Shang Gao, et al.JCI Insight|May 5, 2022
Single-cell transcriptomic profiling of lung endothelial cells identifies dynamic inflammatory and regenerative subpopulationsLianghui Zhang, Shang Gao, Zachary White, et al.Bioinformatics (Oxford, England)|November 25, 2025
scRegulate: single-cell regulatory-embedded variational inference of transcription factor activity from gene expressionMehrdad Zandigohar, Jalees Rehman, Yang DaiBiorxiv : the Preprint Server for Biology|July 14, 2025
scRegulate: Single-Cell Regulatory-Embedded Variational Inference of Transcription Factor Activity from Gene ExpressionMehrdad Zandigohar, Jalees Rehman, Yang DaiBiorxiv : the Preprint Server for Biology|November 30, 2021
Systematic temporal analysis of peripheral blood transcriptomes using TrendCatcher identifies early and persistent neutrophil activation as a hallmark of severe COVID-19Xinge Wang, Mark Sanborn, Yang Dai, et al.JCI Insight|February 17, 2022
Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19Xinge Wang, Mark A Sanborn, Yang Dai, et al.Journal of Molecular Medicine (Berlin, Germany)|September 3, 2010
Empowering self-renewal and differentiation: the role of mitochondria in stem cellsJalees RehmanHepatology Communications|July 31, 2024
Long-term HBV infection of engineered cultures of induced pluripotent stem cell-derived hepatocytesYang Yuan, Vedant V Bodke, Christine Lin, et al.Pageof 136