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Nucleic Acids Research|March 8, 2018
Improving the value of public RNA-seq expression data by phenotype predictionShannon E Ellis, Leonardo Collado-Torres, Andrew Jaffe, et al.F1000Research|July 29, 2016
regionReport: Interactive reports for region-level and feature-level genomic analysesLeonardo Collado-Torres, Andrew E Jaffe, Jeffrey T LeekThe American Statistician|September 28, 2020
How to share data for collaborationShannon E Ellis, Jeffrey T LeekBioinformatics (Oxford, England)|September 6, 2016
Rail-RNA: scalable analysis of RNA-seq splicing and coverageAbhinav Nellore, Leonardo Collado-Torres, Andrew E Jaffe, et al.Nucleic Acids Research|October 4, 2016
Flexible expressed region analysis for RNA-seq with derfinderLeonardo Collado-Torres, Abhinav Nellore, Alyssa C Frazee, et al.Bioinformatics (Oxford, England)|March 12, 2009
The tspair package for finding top scoring pair classifiers in RJeffrey T LeekNucleic Acids Research|October 9, 2014
svaseq: removing batch effects and other unwanted noise from sequencing dataJeffrey T LeekBiometrics|June 22, 2010
Asymptotic conditional singular value decomposition for high-dimensional genomic dataJeffrey T LeekGenome Biology|January 1, 2017
Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read ArchiveAbhinav Nellore, Andrew E Jaffe, Jean-Philippe Fortin, et al.F1000Research|October 19, 2017
recount workflow: Accessing over 70,000 human RNA-seq samples with BioconductorLeonardo Collado-Torres, Abhinav Nellore, Andrew E JaffePageof 17