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Biophysical Journal|September 12, 2006
TASSER-Lite: an automated tool for protein comparative modelingShashi Bhushan Pandit, Yang Zhang, Jeffrey SkolnickBMC Bioinformatics|December 17, 2008
Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-scoreShashi Bhushan Pandit, Jeffrey SkolnickPlos One|August 3, 2019
Unraveling the structural landscape of intra-chain domain interfaces: Implication in the evolution of domain-domain interactionsRivi Verma, Shashi Bhushan PanditJournal of Structural Biology|February 1, 2022
Unusual commonality in active site structural features of substrate promiscuous and specialist enzymesDeeksha Thakur, Shashi Bhushan PanditJournal of Chemical Information and Modeling|August 14, 2025
Deciphering Binding Site Conformational Variability of Substrate Promiscuous and Specialist EnzymesDeeksha Thakur, Paras Verma, Shashi Bhushan PanditProceedings of the National Academy of Sciences of the United States of America|January 18, 2005
The protein structure prediction problem could be solved using the current PDB libraryYang Zhang, Jeffrey SkolnickProceedings of the National Academy of Sciences of the United States of America|May 6, 2004
Automated structure prediction of weakly homologous proteins on a genomic scaleYang Zhang, Jeffrey SkolnickNucleic Acids Research|April 26, 2005
TM-align: a protein structure alignment algorithm based on the TM-scoreYang Zhang, Jeffrey SkolnickBiophysical Journal|September 30, 2004
Tertiary structure predictions on a comprehensive benchmark of medium to large size proteinsYang Zhang, Jeffrey SkolnickProteins|October 12, 2004
Scoring function for automated assessment of protein structure template qualityYang Zhang, Jeffrey SkolnickPageof 1,216