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Journal of Chemical Information and Modeling|May 13, 2023
PROTHON: A Local Order Parameter-Based Method for Efficient Comparison of Protein EnsemblesAdekunle Aina, Shawn C C Hsueh, Steven S PlotkinThe Journal of Physical Chemistry. B|November 21, 2022
Ensemble Generation for Linear and Cyclic Peptides Using a Reservoir Replica Exchange Molecular Dynamics Implementation in GROMACSShawn C C Hsueh, Adekunle Aina, Steven S PlotkinJournal of Chemical Information and Modeling|March 1, 2024
Cyclization Scaffolding for Improved Vaccine Immunogen Stability: Application to Tau Protein in Alzheimer's DiseaseShawn C C Hsueh, Mark Nijland, Adekunle Aina, et al.ACS Chemical Neuroscience|July 17, 2023
De Novo Design of a β-Helix Tau Protein Scaffold: An Oligomer-Selective Vaccine Immunogen Candidate for Alzheimer's DiseaseAdekunle Aina, Shawn C C Hsueh, Ebrima Gibbs, et al.ACS Chemical Neuroscience|July 15, 2022
Optimizing Epitope Conformational Ensembles Using α-Synuclein Cyclic Peptide "Glycindel" Scaffolds: A Customized Immunogen Method for Generating Oligomer-Selective Antibodies for Parkinson's DiseaseShawn C C Hsueh, Adekunle Aina, Andrei Yu Roman, et al.Biophysical Journal|March 16, 2024
Testing the feasibility of targeting a conserved region on the S2 domain of the SARS-CoV-2 spike proteinPranav Garg, Shawn C C Hsueh, Steven S PlotkinFrontiers in Molecular Biosciences|April 11, 2022
First Principles Calculation of Protein-Protein Dimer Affinities of ALS-Associated SOD1 MutantsShawn C C Hsueh, Mark Nijland, Xubiao Peng, et al.Biomedicines|September 23, 2022
Rational Generation of Monoclonal Antibodies Selective for Pathogenic Forms of Alpha-SynucleinEbrima Gibbs, Beibei Zhao, Andrei Roman, et al.Journal of Computational Chemistry|March 29, 2026
FastMDAnalysis: Software for Automated Analysis of Molecular Dynamics TrajectoriesAdekunle Aina, Derrick KwanProceedings of the National Academy of Sciences of the United States of America|September 13, 2007
Generalization of distance to higher dimensional objectsSteven S PlotkinPageof 6