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NAR Genomics and Bioinformatics|August 11, 2021
CONSULT: accurate contamination removal using locality-sensitive hashingEleonora Rachtman, Vineet Bafna, Siavash MirarabJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|November 1, 2011
Rich parameterization improves RNA structure predictionShay Zakov, Yoav Goldberg, Michael Elhadad, et al.BMC Genomics|June 23, 2010
Designing deep sequencing experiments: detecting structural variation and estimating transcript abundanceAli Bashir, Vikas Bansal, Vineet BafnaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2006
Consensus folding of unaligned RNA sequences revisitedVineet Bafna, Haixu Tang, Shaojie ZhangNucleic Acids Research|June 19, 2014
The elusive evidence for chromothripsisMarcus Kinsella, Anand Patel, Vineet BafnaAlgorithms for Molecular Biology : AMB|October 31, 2013
Efficient edit distance with duplications and contractionsTamar Pinhas, Shay Zakov, Dekel Tsur, et al.Current Opinion in Genetics & Development|January 21, 2021
Extrachromosomal DNA (ecDNA) in cancer pathogenesisSihan Wu, Vineet Bafna, Paul S MischelPatterns (New York, N.Y.)|May 24, 2021
FaNDOM: Fast nested distance-based seeding of optical mapsSiavash Raeisi Dehkordi, Jens Luebeck, Vineet BafnaNature Protocols|April 5, 2007
Unrestrictive identification of post-translational modifications through peptide mass spectrometryStephen Tanner, Pavel A Pevzner, Vineet BafnaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 14, 2008
Structural alignment of pseudoknotted RNABuhm Han, Banu Dost, Vineet Bafna, et al.Pageof 21