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Nucleic Acids Research|August 9, 2006
Protein binding site prediction using an empirical scoring functionShide Liang, Chi Zhang, Song Liu, et al.Proteins|July 12, 2007
A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoysShide Liang, Song Liu, Chi Zhang, et al.Proteins|May 19, 2007
Fold recognition by concurrent use of solvent accessibility and residue depthSong Liu, Chi Zhang, Shide Liang, et al.Journal of Computational Chemistry|December 12, 2013
LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chainsShide Liang, Chi Zhang, Yaoqi ZhouHuman Molecular Genetics|March 16, 2006
Uneven size distribution of mammalian genes in the number of tissues expressed and in the number of co-expressed genesSong Liu, Chi Zhang, Yaoqi ZhouProteins|June 28, 2005
Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy functionChi Zhang, Song Liu, Yaoqi ZhouJournal of Proteome Research|April 13, 2005
Domain graph of Arabidopsis proteome by comparative analysisSong Liu, Chi Zhang, Yaoqi ZhouJournal of Proteome Research|April 11, 2006
Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeastChi Zhang, Song Liu, Yaoqi ZhouProtein Science : a Publication of the Protein Society|January 24, 2004
Accurate and efficient loop selections by the DFIRE-based all-atom statistical potentialChi Zhang, Song Liu, Yaoqi ZhouProteins|January 22, 2009
Refining near-native protein-protein docking decoys by local resampling and energy minimizationShide Liang, Guangce Wang, Yaoqi ZhouPageof 792