Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Filters

Shinji Iida

Showing results (1-10 of 11) with videos related to

Pageof 2
Sort By:
Journal of Chemical Information and Modeling|October 29, 2025
Xenon Explores Apparent and Cryptic Binding SitesShinji Iida
Journal of Chemical Information and Modeling|May 15, 2023
Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics SimulationShinji Iida, Tomoshi Kameda
Biophysical Reviews|January 20, 2023
Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomoleculesShinji Iida, Kameda Tomoshi
BBA Advances|July 8, 2021
Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration waterShinji Iida, Yoshifumi Fukunishi
The Biochemical Journal|June 12, 2016
Enhanced conformational sampling to visualize a free-energy landscape of protein complex formationShinji Iida, Haruki Nakamura, Junichi Higo
The Journal of Physical Chemistry. B|November 3, 2020
Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug DesignShinji Iida, Hironori K Nakamura, Tadaaki Mashimo, et al.
Journal of Chemical Theory and Computation|March 12, 2019
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to ExtradisorderShinji Iida, Takeshi Kawabata, Kota Kasahara, et al.
Briefings in Bioinformatics|October 10, 2025
Data-efficient protein mutational effect prediction with weak supervision by molecular simulation and protein language modelsTeppei Deguchi, Nur Syatila Ab Ghani, Yoichi Kurumida, et al.
Journal of Computational Chemistry|October 14, 2016
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational samplingShinji Iida, Tadaaki Mashimo, Takashi Kurosawa, et al.
Methods (San Diego, Calif.)|February 3, 2020
Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulationBenjamin S Hanson, Shinji Iida, Daniel J Read, et al.
Pageof 2

Showing results (1-10 of 11) with videos related to

Sort By:
Pageof 2
Journal of Chemical Information and Modeling|October 29, 2025
Xenon Explores Apparent and Cryptic Binding SitesShinji Iida
Journal of Chemical Information and Modeling|May 15, 2023
Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics SimulationShinji Iida, Tomoshi Kameda
Biophysical Reviews|January 20, 2023
Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomoleculesShinji Iida, Kameda Tomoshi
BBA Advances|July 8, 2021
Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration waterShinji Iida, Yoshifumi Fukunishi
The Biochemical Journal|June 12, 2016
Enhanced conformational sampling to visualize a free-energy landscape of protein complex formationShinji Iida, Haruki Nakamura, Junichi Higo
The Journal of Physical Chemistry. B|November 3, 2020
Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug DesignShinji Iida, Hironori K Nakamura, Tadaaki Mashimo, et al.
Journal of Chemical Theory and Computation|March 12, 2019
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to ExtradisorderShinji Iida, Takeshi Kawabata, Kota Kasahara, et al.
Briefings in Bioinformatics|October 10, 2025
Data-efficient protein mutational effect prediction with weak supervision by molecular simulation and protein language modelsTeppei Deguchi, Nur Syatila Ab Ghani, Yoichi Kurumida, et al.
Journal of Computational Chemistry|October 14, 2016
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational samplingShinji Iida, Tadaaki Mashimo, Takashi Kurosawa, et al.
Methods (San Diego, Calif.)|February 3, 2020
Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulationBenjamin S Hanson, Shinji Iida, Daniel J Read, et al.
Pageof 2