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Cold Spring Harbor Symposia on Quantitative Biology|August 19, 2009
The phylogenetic forest and the quest for the elusive tree of lifeE V Koonin, Y I Wolf, P PuigbòVirology|July 15, 2011
Vaccinia virus F16 protein, a predicted catalytically inactive member of the prokaryotic serine recombinase superfamily, is targeted to nucleoliTatiana G Senkevich, Eugene V Koonin, Bernard MossGenome Research|November 4, 1998
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamilyC J Leonard, L Aravind, E V KooninMbio|March 27, 2014
Coupling between protein level selection and codon usage optimization in the evolution of bacteria and archaeaWenqi Ran, David M Kristensen, Eugene V KooninGenome Biology and Evolution|May 10, 2014
Universal pacemaker of genome evolution in animals and fungi and variation of evolutionary rates in diverse organismsSagi Snir, Yuri I Wolf, Eugene V KooninInternational Journal of Molecular Sciences|January 11, 2022
Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?Irina Sorokina, Arcady R Mushegian, Eugene V KooninEnvironmental Microbiology|September 13, 2022
The global virome: How much diversity and how many independent origins?Eugene V Koonin, Mart Krupovic, Valerian V DoljaMethods in Molecular Biology (Clifton, N.J.)|July 7, 2019
Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of LifePere Puigbò, Yuri I Wolf, Eugene V KooninVirology|March 17, 2015
Origins and evolution of viruses of eukaryotes: The ultimate modularityEugene V Koonin, Valerian V Dolja, Mart KrupovicWiley Interdisciplinary Reviews. RNA|November 10, 2012
Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotesEugene V Koonin, Miklos Csuros, Igor B RogozinPageof 1,280