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BMC Genomics|August 30, 2014
Parallel selection on gene copy number variations through evolution of three-spined stickleback genomesShotaro Hirase, Haruka Ozaki, Wataru IwasakiGenome Biology and Evolution|March 27, 2016
Parallel Mitogenome Sequencing Alleviates Random Rooting Effect in PhylogeographyShotaro Hirase, Hirohiko Takeshima, Mutsumi Nishida, et al.Ecology and Evolution|February 23, 2023
Accumulation of gene copy number variations during the early phase of free-spawning abalone speciationShotaro Hirase, Masashi Sekino, Motoyuki Hara, et al.Heredity|June 13, 2019
Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersiiShotaro Hirase, Tomoyuki Kokita, Atsushi J Nagano, et al.Journal of Invertebrate Pathology|August 2, 2019
First discovery of Perkinsus beihaiensis in Mediterranean mussels (Mytilus galloprovincialis) in Tokyo Bay, JapanNaoki Itoh, Yoshiki Komatsu, Kazuki Maeda, et al.DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes|February 13, 2026
Silver chimaera genome highlights lineage-specific sex chromosome and opsin gene evolution in holocephalansAkinori Teramura, Mitsutaka Kadota, Shotaro Hirase, et al.Molecular Ecology|December 4, 2023
Genomic landscape of introgression from the ghost lineage in a gobiid fish uncovers the generality of forces shaping hybrid genomesShuya Kato, Seiji Arakaki, Atsushi J Nagano, et al.Molecular Ecology|December 16, 2024
Phenotypic and Genomic Signatures of Latitudinal Local Adaptation Along With Prevailing Ocean Current in a Coastal GobyShotaro Hirase, Atsushi J Nagano, Kenji Nohara, et al.Molecular Ecology Resources|November 7, 2025
Ancestral Origin and Structural Characteristics of Non-Syntenic Homologous Chromosomes in Abalones (Haliotis)Shotaro Hirase, Takashi Makino, Takeshi Takeuchi, et al.Journal of Evolutionary Biology|March 24, 2022
Genomic signatures for latitudinal selection in the tropical eel Anguilla marmorataShotaro Hirase, Yusuke Kumai, Shuya Kato, et al.Pageof 2