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The Journal of Physical Chemistry Letters
|
January 2, 2016
Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations
Shun Sakuraba, Kiyoshi Asai, Tomoshi Kameda
Plos Computational Biology
|
October 10, 2019
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
Plos Computational Biology
|
March 12, 2016
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
Biophysics and Physicobiology
|
January 28, 2020
Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
The Journal of Physical Chemistry. B
|
February 15, 2018
Enhanced Sampling of Molecular Dynamics Simulations of a Polyalanine Octapeptide: Effects of the Periodic Boundary Conditions on Peptide Conformation
Kota Kasahara, Shun Sakuraba, Ikuo Fukuda
Physical Chemistry Chemical Physics : PCCP
|
September 18, 2012
Interaction of naphthalene derivatives with lipids in membranes studied by the 1H-nuclear Overhauser effect and molecular dynamics simulation
Megumi Shintani, Yushi Matsuo, Shun Sakuraba, et al.
ACS Physical Chemistry Au
|
December 5, 2024
Unveiling the Photoactivation Mechanism of BLUF Photoreceptor Protein through Hybrid Quantum Mechanics/Molecular Mechanics Free-Energy Calculation
Masahiko Taguchi, Shun Sakuraba, Justin Chan, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
|
July 12, 2018
Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data
Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, et al.
The Journal of Physical Chemistry. B
|
July 9, 2019
Role of the Photosystem II as an Environment in the Oxidation Free Energy of the Mn Cluster from S<sub>1</sub> to S<sub>2</sub>
Hideaki Takahashi, Daiki Suzuoka, Shun Sakuraba, et al.
Journal of Chemical Information and Modeling
|
August 5, 2014
Molecular binding sites are located near the interface of intrinsic dynamics domains (IDDs)
Hongchun Li, Shun Sakuraba, Aravind Chandrasekaran, et al.
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Search research articles
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Showing results (11-20 of 45) with videos related to
Sort By:
Page
of 5
The Journal of Physical Chemistry Letters
|
January 2, 2016
Predicting RNA Duplex Dimerization Free-Energy Changes upon Mutations Using Molecular Dynamics Simulations
Shun Sakuraba, Kiyoshi Asai, Tomoshi Kameda
Plos Computational Biology
|
October 10, 2019
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
Plos Computational Biology
|
March 12, 2016
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
Biophysics and Physicobiology
|
January 28, 2020
Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
The Journal of Physical Chemistry. B
|
February 15, 2018
Enhanced Sampling of Molecular Dynamics Simulations of a Polyalanine Octapeptide: Effects of the Periodic Boundary Conditions on Peptide Conformation
Kota Kasahara, Shun Sakuraba, Ikuo Fukuda
Physical Chemistry Chemical Physics : PCCP
|
September 18, 2012
Interaction of naphthalene derivatives with lipids in membranes studied by the 1H-nuclear Overhauser effect and molecular dynamics simulation
Megumi Shintani, Yushi Matsuo, Shun Sakuraba, et al.
ACS Physical Chemistry Au
|
December 5, 2024
Unveiling the Photoactivation Mechanism of BLUF Photoreceptor Protein through Hybrid Quantum Mechanics/Molecular Mechanics Free-Energy Calculation
Masahiko Taguchi, Shun Sakuraba, Justin Chan, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics
|
July 12, 2018
Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data
Shimpei Nishida, Shun Sakuraba, Kiyoshi Asai, et al.
The Journal of Physical Chemistry. B
|
July 9, 2019
Role of the Photosystem II as an Environment in the Oxidation Free Energy of the Mn Cluster from S<sub>1</sub> to S<sub>2</sub>
Hideaki Takahashi, Daiki Suzuoka, Shun Sakuraba, et al.
Journal of Chemical Information and Modeling
|
August 5, 2014
Molecular binding sites are located near the interface of intrinsic dynamics domains (IDDs)
Hongchun Li, Shun Sakuraba, Aravind Chandrasekaran, et al.
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of 5