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Plos Computational Biology|November 20, 2023
Neural network models for sequence-based TCR and HLA association predictionSi Liu, Philip Bradley, Wei SunBiorxiv : the Preprint Server for Biology|June 9, 2023
Neural Network Models for Sequence-Based TCR and HLA Association PredictionSi Liu, Philip Bradley, Wei SunStatistics in Biosciences|July 15, 2026
Improved Deep Learning Prediction of TCR-HLA AssociationsFumin Li, Si Liu, Wei SunScientific Reports|October 29, 2025
Exploration of the roles of HLAs when predicting infection status by T cell receptorsFeng Ding, Si Liu, Wei SunProtein Science : a Publication of the Protein Society|February 16, 2012
Structural modeling of TAL effector-DNA interactionsPhilip BradleyElife|January 20, 2023
Structure-based prediction of T cell receptor:peptide-MHC interactionsPhilip BradleyGenome Biology|January 25, 2022
IDEAS: individual level differential expression analysis for single-cell RNA-seq dataMengqi Zhang, Si Liu, Zhen Miao, et al.Nature Communications|May 25, 2023
A computational method for cell type-specific expression quantitative trait loci mapping using bulk RNA-seq dataPaul Little, Si Liu, Vasyl Zhabotynsky, et al.Proteins|February 28, 2013
Probing the role of interfacial waters in protein-DNA recognition using a hybrid implicit/explicit solvation modelShen Li, Philip BradleyProceedings of the National Academy of Sciences of the United States of America|April 12, 2011
Large-scale characterization of peptide-MHC binding landscapes with structural simulationsChen Yanover, Philip BradleyPageof 796