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Journal of Proteome Research|March 25, 2010
pNovo: de novo peptide sequencing and identification using HCD spectraHao Chi, Rui-Xiang Sun, Bing Yang, et al.Rapid Communications in Mass Spectrometry : RCM|February 27, 2010
Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexingYou Li, Hao Chi, Le-Heng Wang, et al.BMC Bioinformatics|February 12, 2009
Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differencesYan Fu, Wei Jia, Zhuang Lu, et al.Journal of Proteome Research|October 2, 2010
Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectraRui-Xiang Sun, Meng-Qiu Dong, Chun-Qing Song, et al.Analytical Chemistry|May 7, 2014
pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratiosChao Liu, Chun-Qing Song, Zuo-Fei Yuan, et al.Proteomics|November 23, 2011
pParse: a method for accurate determination of monoisotopic peaks in high-resolution mass spectraZuo-Fei Yuan, Chao Liu, Hai-Peng Wang, et al.Journal of Proteomics|May 17, 2015
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS dataHao Chi, Kun He, Bing Yang, et al.Journal of Proteomics|August 2, 2015
Reprint of "pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data"Hao Chi, Kun He, Bing Yang, et al.Molecular & Cellular Proteomics : MCP|April 20, 2025
Global analysis of protein and small-molecule substrates of ubiquitin-like proteins (UBLs)Guang-Can Shao, Zhen-Lin Chen, Shan Lu, et al.Nature Methods|February 10, 2015
Mapping native disulfide bonds at a proteome scaleShan Lu, Sheng-Bo Fan, Bing Yang, et al.Pageof 6