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Plos Computational Biology|October 7, 2024
BoReMi: Bokeh-based jupyter-interface for registering spatio-molecular data to related microscopy imagesJaspreet Ishar, Yee Man Tam, Simon Mages, et al.Nature Biotechnology|February 16, 2023
TACCO unifies annotation transfer and decomposition of cell identities for single-cell and spatial omicsSimon Mages, Noa Moriel, Inbal Avraham-Davidi, et al.Cell Reports|April 22, 2023
Emergence of division of labor in tissues through cell interactions and spatial cuesMiri Adler, Noa Moriel, Aleksandrina Goeva, et al.Genome Biology|May 2, 2025
SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics dataDiane Zhang, Åsa Segerstolpe, Michal Slyper, et al.Elife|December 12, 2025
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomicsInbal Avraham-Davidi, Simon Mages, Johanna Klughammer, et al.Biorxiv : the Preprint Server for Biology|July 16, 2025
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomicsInbal Avraham-Davidi, Simon Mages, Johanna Klughammer, et al.Science Immunology|January 11, 2024
UNC93B1 variants underlie TLR7-dependent autoimmunityChristine Wolf, Ee Lyn Lim, Mohammad Mokhtari, et al.Nature Medicine|October 31, 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological featuresJohanna Klughammer, Daniel L Abravanel, Åsa Segerstolpe, et al.Pageof 1