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STAR Protocols|May 9, 2025
Protocol for the imputation of stimulus-induced single-cell gene expression trajectories from time-series scRNA-seq dataKatherine M Sheu, Alexander HoffmannChemical Communications (Cambridge, England)|November 12, 2013
Hiking on the potential energy surface of a functional tyrosinase model--implications of singlet, broken-symmetry and triplet descriptionAlexander Hoffmann, Sonja Herres-PawlisJournal of Theoretical Biology|September 20, 2015
A multi-scale mathematical modeling framework to investigate anti-viral therapeutic opportunities in targeting HIV-1 accessory proteinsGajendra W Suryawanshi, Alexander HoffmannPlos Computational Biology|March 8, 2013
A protein turnover signaling motif controls the stimulus-sensitivity of stress response pathwaysPaul Michael Loriaux, Alexander HoffmannPlos One|July 5, 2013
FlowMax: A Computational Tool for Maximum Likelihood Deconvolution of CFSE Time CoursesMaxim Nikolaievich Shokhirev, Alexander HoffmannBiomedicines|May 28, 2022
Controlling Cancer Cell Death Types to Optimize Anti-Tumor ImmunityMarie Oliver Metzig, Alexander HoffmannMethods in Cell Biology|April 10, 2012
A framework for modeling the relationship between cellular steady-state and stimulus-responsivenessPaul M Loriaux, Alexander HoffmannFrontiers in Immunology|May 23, 2022
From Antibody Repertoires to Cell-Cell Interactions to Molecular Networks: Bridging Scales in the Germinal CenterHaripriya Vaidehi Narayanan, Alexander HoffmannAnnual Review of Immunology|April 26, 2022
Functional Hallmarks of Healthy Macrophage Responses: Their Regulatory Basis and Disease RelevanceKatherine M Sheu, Alexander HoffmannCell Death & Disease|August 16, 2025
Systems biology-enabled targeting of NF-κΒ and BCL2 overcomes microenvironment-mediated BH3-mimetic resistance in DLBCLAimilia Vareli, Haripriya Vaidehi Narayanan, Heather Clark, et al.Pageof 34