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Trends in Microbiology|June 1, 2022
Diversity in the soil virosphere: to infinity and beyond?Simon Roux, Joanne B EmersonNature Microbiology|August 27, 2025
A call for caution in the biological interpretation of viral auxiliary metabolic genesCody Martin, Joanne B Emerson, Simon Roux, et al.Peerj|September 27, 2017
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversitySimon Roux, Joanne B Emerson, Emiley A Eloe-Fadrosh, et al.BMC Biotechnology|November 9, 2019
Multiplex quantitative PCR for single-reaction genetically modified (GM) plant detection and identification of false-positive GM plants linked to Cauliflower mosaic virus (CaMV) infectionAurélie Bak, Joanne B EmersonPeerj|June 21, 2017
Putative archaeal viruses from the mesopelagic oceanDean R Vik, Simon Roux, Jennifer R Brum, et al.Biorxiv : the Preprint Server for Biology|June 4, 2026
ZipStrain Enables Rapid and Precise Strain-Resolved MetagenomicsParsa Ghadermazi, Joanne B Emerson, Matthew R OlmMsystems|May 24, 2019
A Viral Ecogenomics Framework To Uncover the Secrets of Nature's "Microbe Whisperers"Simon RouxISME Communications|May 19, 2025
Soil viral communities shifted significantly after wildfire in chaparral and woodland habitatsSara E Geonczy, Anneliek M Ter Horst, Joanne B EmersonEnvironmental Microbiology|March 3, 2015
Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phylaJoanne B Emerson, Brian C Thomas, Walter Alvarez, et al.Pageof 23