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Frontiers in Molecular Biosciences
|
May 24, 2021
Drug Repurposing on G Protein-Coupled Receptors Using a Computational Profiling Approach
Alessandra de Felice, Simone Aureli, Vittorio Limongelli
Nature Computational Science
|
July 22, 2025
Learning committor-consistent collective variables
Thorben Fröhlking, Simone Aureli, Francesco Luigi Gervasio
Journal of Chemical Information and Modeling
|
November 11, 2024
Investigating Ligand-Mediated Conformational Dynamics of Pre-miR21: A Machine-Learning-Aided Enhanced Sampling Study
Simone Aureli, Francesco Bellina, Valerio Rizzi, et al.
Journal of Chemical Theory and Computation
|
July 28, 2025
Enhanced Sampling and Tailored Collective Variables Yield Reproducible Free Energy Landscapes of Beta-1 Adrenergic Receptor Activation
Simone Aureli, Valerio Rizzi, Nicola Piasentin, et al.
The Journal of Chemical Physics
|
September 16, 2024
DeepLNE++ leveraging knowledge distillation for accelerated multi-state path-like collective variables
Thorben Fröhlking, Valerio Rizzi, Simone Aureli, et al.
Bioinformatics (Oxford, England)
|
July 16, 2019
DDT - Drug Discovery Tool: a fast and intuitive graphics user interface for docking and molecular dynamics analysis
Simone Aureli, Daniele Di Marino, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
August 21, 2023
OneOPES, a Combined Enhanced Sampling Method to Rule Them All
Valerio Rizzi, Simone Aureli, Narjes Ansari, et al.
Communications Chemistry
|
November 7, 2023
Conformational plasticity and allosteric communication networks explain Shelterin protein TPP1 binding to human telomerase
Simone Aureli, Vince Bart Cardenas, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
November 14, 2024
Host-Guest Binding Free Energies à la Carte: An Automated OneOPES Protocol
Pedro Febrer Martinez, Valerio Rizzi, Simone Aureli, et al.
The Journal of Physical Chemistry Letters
|
March 3, 2026
A Transferable and Robust Computational Framework for Class A GPCR Activation Free Energies
Simone Aureli, Nicola Piasentin, Thorben Fröhlking, et al.
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Search research articles
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Showing results (1-10 of 19) with videos related to
Sort By:
Page
of 2
Frontiers in Molecular Biosciences
|
May 24, 2021
Drug Repurposing on G Protein-Coupled Receptors Using a Computational Profiling Approach
Alessandra de Felice, Simone Aureli, Vittorio Limongelli
Nature Computational Science
|
July 22, 2025
Learning committor-consistent collective variables
Thorben Fröhlking, Simone Aureli, Francesco Luigi Gervasio
Journal of Chemical Information and Modeling
|
November 11, 2024
Investigating Ligand-Mediated Conformational Dynamics of Pre-miR21: A Machine-Learning-Aided Enhanced Sampling Study
Simone Aureli, Francesco Bellina, Valerio Rizzi, et al.
Journal of Chemical Theory and Computation
|
July 28, 2025
Enhanced Sampling and Tailored Collective Variables Yield Reproducible Free Energy Landscapes of Beta-1 Adrenergic Receptor Activation
Simone Aureli, Valerio Rizzi, Nicola Piasentin, et al.
The Journal of Chemical Physics
|
September 16, 2024
DeepLNE++ leveraging knowledge distillation for accelerated multi-state path-like collective variables
Thorben Fröhlking, Valerio Rizzi, Simone Aureli, et al.
Bioinformatics (Oxford, England)
|
July 16, 2019
DDT - Drug Discovery Tool: a fast and intuitive graphics user interface for docking and molecular dynamics analysis
Simone Aureli, Daniele Di Marino, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
August 21, 2023
OneOPES, a Combined Enhanced Sampling Method to Rule Them All
Valerio Rizzi, Simone Aureli, Narjes Ansari, et al.
Communications Chemistry
|
November 7, 2023
Conformational plasticity and allosteric communication networks explain Shelterin protein TPP1 binding to human telomerase
Simone Aureli, Vince Bart Cardenas, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
November 14, 2024
Host-Guest Binding Free Energies à la Carte: An Automated OneOPES Protocol
Pedro Febrer Martinez, Valerio Rizzi, Simone Aureli, et al.
The Journal of Physical Chemistry Letters
|
March 3, 2026
A Transferable and Robust Computational Framework for Class A GPCR Activation Free Energies
Simone Aureli, Nicola Piasentin, Thorben Fröhlking, et al.
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of 2