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Proceedings of the National Academy of Sciences of the United States of America|April 5, 2023
A fitness trade-off explains the early fate of yeast aneuploids with chromosome gainsSimone Pompei, Marco Cosentino LagomarsinoPlos One|October 3, 2012
Phylogenetic properties of RNA virusesSimone Pompei, Vittorio Loreto, Francesca TriaPlos One|June 16, 2011
On the accuracy of language treesSimone Pompei, Vittorio Loreto, Francesca TriaPlos Computational Biology|October 4, 2023
Metacommunity structure preserves genome diversity in the presence of gene-specific selective sweeps under moderate rates of horizontal gene transferSimone Pompei, Edoardo Bella, Joshua S Weitz, et al.Proceedings of the National Academy of Sciences of the United States of America|March 2, 2021
Adaptive evolution of hybrid bacteria by horizontal gene transferJeffrey J Power, Fernanda Pinheiro, Simone Pompei, et al.Cell Reports|February 16, 2025
Evolutionary adaptation to hyperstable microtubules selectively targets tubulins and is empowered by the spindle assembly checkpointFrancesca Macaluso, Tasia Bos, Elena Chiroli, et al.Trends in Microbiology|November 4, 2017
Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary BiologyDylan H Morris, Katelyn M Gostic, Simone Pompei, et al.Nature Genetics|July 11, 2022
A modified fluctuation-test framework characterizes the population dynamics and mutation rate of colorectal cancer persister cellsMariangela Russo, Simone Pompei, Alberto Sogari, et al.The EMBO Journal|October 4, 2021
Epistasis, aneuploidy, and functional mutations underlie evolution of resistance to induced microtubule depolymerizationMattia Pavani, Paolo Bonaiuti, Elena Chiroli, et al.Science Advances|September 15, 2023
Clonal cooperation through soluble metabolite exchange facilitates metastatic outgrowth by modulating Allee effectBenjamin J Hershey, Sara Barozzi, Fabrizio Orsenigo, et al.Pageof 2