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Cancer Research|October 2, 2024
Tumor Evolution Reconstruction Is Heavily Influenced by Algorithmic and Experimental ChoicesRija Zaidi, Simone ZaccariaPlos Computational Biology|January 10, 2013
Chapter 6: Structural variation and medical genomicsBenjamin J RaphaelAlgorithms for Molecular Biology : AMB|March 14, 2022
Parsimonious Clone Tree Integration in cancerPalash Sashittal, Simone Zaccaria, Mohammed El-KebirBioinformatics (Oxford, England)|July 14, 2020
Copy number evolution with weighted aberrations in cancerRon Zeira, Benjamin J RaphaelPlos Computational Biology|December 4, 2024
A regression based approach to phylogenetic reconstruction from multi-sample bulk DNA sequencing of tumorsHenri Schmidt, Benjamin J RaphaelBioinformatics (Oxford, England)|June 29, 2018
Haplotype phasing in single-cell DNA-sequencing dataGryte Satas, Benjamin J RaphaelBioinformatics (Oxford, England)|August 29, 2015
Identification of hierarchical chromatin domainsCaleb Weinreb, Benjamin J RaphaelBioinformatics (Oxford, England)|September 9, 2017
Tumor phylogeny inference using tree-constrained importance samplingGryte Satas, Benjamin J RaphaelGenome Research|September 5, 2020
Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samplesSergey Aganezov, Benjamin J RaphaelCell Systems|June 1, 2026
The tree labeling polytope: A unified approach to ancestral reconstruction problemsHenri Schmidt, Benjamin J RaphaelPageof 19