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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 19, 2015
Simultaneous inference of cancer pathways and tumor progression from cross-sectional mutation dataBenjamin J Raphael, Fabio VandinBiorxiv : the Preprint Server for Biology|March 3, 2025
The tree labeling polytope: a unified approach to ancestral reconstruction problemsHenri Schmidt, Benjamin J RaphaelBioinformatics (Oxford, England)|August 12, 2008
Analysis of segmental duplications via duplication distanceCrystal L Kahn, Benjamin J RaphaelJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 10, 2010
Identification and frequency estimation of inversion polymorphisms from haplotype dataSuzanne S Sindi, Benjamin J RaphaelBioinformatics (Oxford, England)|July 21, 2004
Reconstructing tumor amplisomesBenjamin J Raphael, Pavel A PevznerPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 13, 2009
A parsimony approach to analysis of human segmental duplicationsCrystal L Kahn, Benjamin J RaphaelBMC Bioinformatics|February 26, 2014
On the inversion-indel distanceEyla Willing, Simone Zaccaria, Marília D V Braga, et al.Bioinformatics (Oxford, England)|April 10, 2010
Structural variation analysis with strobe readsAnna Ritz, Ali Bashir, Benjamin J RaphaelBiorxiv : the Preprint Server for Biology|March 3, 2025
Joint imputation and deconvolution of gene expression across spatial transcriptomics platformsHongyu Zheng, Hirak Sarkar, Benjamin J RaphaelBioinformatics (Oxford, England)|June 28, 2024
Maximum likelihood phylogeographic inference of cell motility and cell division from spatial lineage tracing dataUyen Mai, Gary Hu, Benjamin J RaphaelPageof 19