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Biorxiv : the Preprint Server for Biology|March 18, 2024
Maximum Likelihood Inference of Time-scaled Cell Lineage Trees with Mixed-type Missing DataUyen Mai, Gillian Chu, Benjamin J RaphaelPlos Computational Biology|November 9, 2023
A zero-agnostic model for copy number evolution in cancerHenri Schmidt, Palash Sashittal, Benjamin J RaphaelBMC Genomics|January 10, 2015
Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomesCaleb Weinreb, Layla Oesper, Benjamin J RaphaelGenetics|August 5, 2016
Gene and Network Analysis of Common Variants Reveals Novel Associations in Multiple Complex DiseasesPriyanka Nakka, Benjamin J Raphael, Sohini RamachandranBioinformatics (Oxford, England)|November 30, 2017
Identifying simultaneous rearrangements in cancer genomesLayla Oesper, Simone Dantas, Benjamin J RaphaelJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 10, 2015
On the Sample Complexity of Cancer Pathways IdentificationFabio Vandin, Benjamin J Raphael, Eli UpfalBiorxiv : the Preprint Server for Biology|January 30, 2023
PASTE2: Partial Alignment of Multi-slice Spatially Resolved Transcriptomics DataXinhao Liu, Ron Zeira, Benjamin J RaphaelBiorxiv : the Preprint Server for Biology|May 7, 2024
A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancerAhmed Shuaibi, Uthsav Chitra, Benjamin J RaphaelBiorxiv : the Preprint Server for Biology|April 24, 2023
A zero-agnostic model for copy number evolution in cancerHenri Schmidt, Palash Sashittal, Benjamin J RaphaelGenome Biology|July 31, 2013
THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing dataLayla Oesper, Ahmad Mahmoody, Benjamin J RaphaelPageof 19