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Journal of the American Society for Mass Spectrometry|September 4, 2020
Robust Accurate Identification and Biomass Estimates of Microorganisms via Tandem Mass SpectrometryGelio Alves, Yi-Kuo YuDatabase : the Journal of Biological Databases and Curation|August 30, 2011
ppiTrim: constructing non-redundant and up-to-date interactomesAleksandar Stojmirović, Yi-Kuo YuBioinformatics (Oxford, England)|November 2, 2014
Mass spectrometry-based protein identification with accurate statistical significance assignmentGelio Alves, Yi-Kuo YuBioinformatics (Oxford, England)|October 29, 2004
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositionsYi-Kuo Yu, Stephen F AltschulPlos One|August 3, 2019
Exploring induced pluripotency in human fibroblasts via construction, validation, and application of a gene regulatory networkMehdi B Hamaneh, Yi-Kuo YuJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 28, 2011
The complexity of the dirichlet model for multiple alignment dataYi-Kuo Yu, Stephen F AltschulPlos One|November 1, 2014
Relating diseases by integrating gene associations and information flow through protein interaction networkMehdi Bagheri Hamaneh, Yi-Kuo YuJournal of Proteome Research|August 27, 2025
FastSpel: A Method for Fast Spectral Library GenerationMehdi B Hamaneh, Yi-Kuo YuComputational Biology and Chemistry|November 19, 2004
Scale-free networks versus evolutionary driftTeresa M Przytycka, Yi-Kuo YuJournal of Rare Diseases Research & Treatment|March 12, 2019
Mechanism-based disease similarityMehdi B Hamaneh, Yi-Kuo YuPageof 9