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BMC Research Notes|June 7, 2015
DeCoaD: determining correlations among diseases using protein interaction networksMehdi B Hamaneh, Yi-Kuo YuBMC Research Notes|May 17, 2012
CytoITMprobe: a network information flow plugin for CytoscapeAleksandar Stojmirović, Alexander Bliskovsky, Yi-Kuo YuBulletin of Mathematical Biology|February 5, 2005
Toward an accurate statistics of gapped alignmentsMaik Kschischo, Michael Lässig, Yi-Kuo YuBioinformatics (Oxford, England)|June 21, 2002
Hybrid alignment: high-performance with universal statisticsYi-Kuo Yu, Ralf Bundschuh, Terence HwaBioinformatics (Oxford, England)|February 21, 2012
CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scoresAleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo YuJournal of Proteomics|November 9, 2010
Assigning statistical significance to proteotypic peptides via database searchesGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|August 26, 2003
Reentrant synclinic phase in an electric-field-temperature-phase diagram for enantiomeric mixtures of an antiferroelectric liquid crystalNeha M Patel, Charles Rosenblatt, Yi-Kuo YuPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|December 15, 2015
Analytical solution and scaling of fluctuations in complex networks traversed by damped, interacting random walkersMehdi Bagheri Hamaneh, Jonah Haber, Yi-Kuo YuJournal of Proteome Research|July 18, 2025
Biological Function Assignment across Taxonomic Levels in Mass-Spectrometry-Based Metaproteomics via a Modified Expectation Maximization AlgorithmGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuPhysical Review Letters|November 13, 2007
Heat conduction process on community networks as a recommendation modelYi-Cheng Zhang, Marcel Blattner, Yi-Kuo YuPageof 9