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Biorxiv : the Preprint Server for Biology|July 16, 2025
Biological Function Assignment Across Taxonomic Levels in Mass-Spectrometry-Based Metaproteomics via a Modified Expectation Maximization AlgorithmGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuProteomics|March 26, 2019
RAId: Knowledge-Integrated Proteomics Web Service with Accurate Statistical Significance AssignmentAleksey Y Ogurtsov, Gelio Alves, Yi-Kuo YuJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 28, 2011
On the inference of dirichlet mixture priors for protein sequence comparisonXugang Ye, Yi-Kuo Yu, Stephen F AltschulJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 7, 2010
Compositional adjustment of Dirichlet mixture priorsXugang Ye, Yi-Kuo Yu, Stephen F AltschulPlos One|November 25, 2010
RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statisticsGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuPhysical Review. E, Statistical, Nonlinear, and Soft Matter Physics|February 21, 2006
Score statistics of global sequence alignment from the energy distribution of a modified directed polymer and directed percolation problemMihaela E Sardiu, Gelio Alves, Yi-Kuo YuBMC Genomics|October 29, 2008
RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integrationGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuBiology Direct|October 27, 2007
RAId_DbS: peptide identification using database searches with realistic statisticsGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuJournal of the American Society for Mass Spectrometry|November 21, 2013
Molecular Isotopic Distribution Analysis (MIDAs) with adjustable mass accuracyGelio Alves, Aleksey Y Ogurtsov, Yi-Kuo YuProceedings of the National Academy of Sciences of the United States of America|December 10, 2003
The compositional adjustment of amino acid substitution matricesYi-Kuo Yu, John C Wootton, Stephen F AltschulPageof 9