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Bioinformatics (Oxford, England)|March 31, 2015
Global optimization-based inference of chemogenomic features from drug-target interactionsSongpeng Zu, Ting Chen, Shao LiBioinformatics (Oxford, England)|June 30, 2016
Evaluating the molecule-based prediction of clinical drug responses in cancerZijian Ding, Songpeng Zu, Jin GuNAR Genomics and Bioinformatics|October 8, 2020
SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variationZhirui Hu, Songpeng Zu, Jun S LiuBioinformatics (Oxford, England)|March 15, 2020
VISAR: an interactive tool for dissecting chemical features learned by deep neural network QSAR modelsQingyang Ding, Siyu Hou, Songpeng Zu, et al.Genome Research|March 4, 2026
Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's diseaseKangli Wang, Weikun Xia, Yingli Gu, et al.Biorxiv : the Preprint Server for Biology|February 12, 2026
Integrative Single-Cell Epigenomic Atlas Annotates the Regulatory Genome of the Adult Mouse BrainZhaoning Wang, Songpeng Zu, Ethan J Armand, et al.Biorxiv : the Preprint Server for Biology|June 6, 2025
Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain AgingMaria Luisa Amaral, Sainath Mamde, Michael Miller, et al.Cell Reports|March 13, 2026
Single-cell epigenomics uncovers heterochromatin instability and transcription factor dysfunction during mouse brain agingMaria Luisa Amaral, Sainath Mamde, Michael Miller, et al.Biorxiv : the Preprint Server for Biology|May 3, 2023
Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse BrainHanqing Liu, Qiurui Zeng, Jingtian Zhou, et al.Nature|December 13, 2023
Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brainHanqing Liu, Qiurui Zeng, Jingtian Zhou, et al.Pageof 2