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Journal of Molecular Graphics & Modelling|September 4, 2020
DNA base sequence specificity through partial intercalation: DFT-D based energy analysis of molecular dynamics snapshotsSoumi Das, Siddhartha Roy, Dhananjay BhattacharyyaBiopolymers|May 26, 2022
Understanding the role of non-Watson-Crick base pairs in DNA-protein recognition: Structural and energetic aspects using crystallographic database analysis and quantum chemical calculationSoumi Das, Siddhartha Roy, Dhananjay BhattacharyyaJournal of Biomolecular Structure & Dynamics|April 3, 2025
Decoding the effect of temperatures on conformational stability and order of ligand unbound thermosensing adenine riboswitch using molecular dynamics simulationSoumi DasPhysical Chemistry Chemical Physics : PCCP|May 27, 2017
Specific DNA sequences allosterically enhance protein-protein interaction in a transcription factor through modulation of protein dynamics: implications for specificity of gene regulationAbhishek Mazumder, Subrata Batabyal, Manas Mondal, et al.Bioinformatics (Oxford, England)|June 13, 2022
MetBP: a software tool for detection of interaction between metal ion-RNA base pairsParthajit Roy, Dhananjay BhattacharyyaJournal of Molecular Modeling|October 2, 2017
Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulationDebasish Mukherjee, Dhananjay BhattacharyyaPhysical Chemistry Chemical Physics : PCCP|October 19, 2017
Stacking interactions involving non-Watson-Crick basepairs: dispersion corrected density functional theory studiesSatyabrata Maiti, Dhananjay BhattacharyyaJournal of Biomolecular Structure & Dynamics|September 12, 2012
Influence of divalent magnesium ion on DNA: molecular dynamics simulation studiesSanchita Mukherjee, Dhananjay BhattacharyyaJournal of Computer-Aided Molecular Design|December 11, 2019
Sequence specificity in DNA-drug intercalation: MD simulation and density functional theory approachesLakshmi Maganti, Dhananjay BhattacharyyaThe Journal of Physical Chemistry. B|September 8, 2012
Structural variations of single and tandem mismatches in RNA duplexes: a joint MD simulation and crystal structure database analysisSukanya Halder, Dhananjay BhattacharyyaPageof 28