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Frontiers in Bioinformatics|November 2, 2023
Protein quality assessment with a loss function designed for high-quality decoysSoumyadip Roy, Asa Ben-HurFrontiers in Bioinformatics|January 2, 2023
On the choice of negative examples for prediction of host-pathogen protein interactionsDon Neumann, Soumyadip Roy, Fayyaz Ul Amir Afsar Minhas, et al.Nucleic Acids Research|May 5, 2021
A self-attention model for inferring cooperativity between regulatory featuresFahad Ullah, Asa Ben-HurMethods in Molecular Biology (Clifton, N.J.)|March 12, 2010
A user's guide to support vector machinesAsa Ben-Hur, Jason WestonNAR Genomics and Bioinformatics|January 8, 2026
A comprehensive evaluation of self-attention for detecting regulatory feature interactionsSaira Jabeen, Asa Ben-HurBioinformatics (Oxford, England)|July 12, 2003
Remote homology detection: a motif based approachAsa Ben-Hur, Douglas BrutlagJournal of Bioinformatics and Computational Biology|April 20, 2010
Hierarchical classification of gene ontology terms using the GOstruct methodArtem Sokolov, Asa Ben-HurPlos Computational Biology|January 10, 2025
The role of chromatin state in intron retention: A case study in leveraging large scale deep learning modelsAhmed Daoud, Asa Ben-HurBioinformatics (Oxford, England)|June 18, 2005
Kernel methods for predicting protein-protein interactionsAsa Ben-Hur, William Stafford NobleBioinformatics (Oxford, England)|March 4, 2009
The use of gene ontology evidence codes in preventing classifier assessment biasMark F Rogers, Asa Ben-HurPageof 7