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Biorxiv : the Preprint Server for Biology|March 23, 2026
EpiExpr: Predicting gene expression using epigenetic data and chromatin interactionsSourya Bhattacharyya, Ferhat AyNature Communications|September 17, 2024
Identifying genetic variants associated with chromatin looping and genome functionSourya Bhattacharyya, Ferhat AyNature Protocols|January 26, 2020
Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2Arya Kaul, Sourya Bhattacharyya, Ferhat AyNature Communications|September 19, 2019
Identification of significant chromatin contacts from HiChIP data by FitHiChIPSourya Bhattacharyya, Vivek Chandra, Pandurangan Vijayanand, et al.Cell Reports Methods|November 4, 2025
DiffHiChIP: Identifying differential chromatin contacts from HiChIP dataSourya Bhattacharyya, Daniela Salgado Figueroa, Katia Georgopoulos, et al.Nature Communications|November 20, 2021
COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell typesBenjamin J Schmiedel, Job Rocha, Cristian Gonzalez-Colin, et al.Biorxiv : the Preprint Server for Biology|December 10, 2020
COVID-19 genetic risk variants are associated with expression of multiple genes in diverse immune cell typesBenjamin J Schmiedel, Vivek Chandra, Job Rocha, et al.Cell|November 23, 2023
Lineage-specific 3D genome organization is assembled at multiple scales by IKAROSYeguang Hu, Daniela Salgado Figueroa, Zhihong Zhang, et al.Biorxiv : the Preprint Server for Biology|May 15, 2024
Loop Catalog: a comprehensive HiChIP database of human and mouse samplesJoaquin Reyna, Kyra Fetter, Romeo Ignacio, et al.Genome Biology|June 20, 2025
Loop Catalog: a comprehensive HiChIP database of human and mouse samplesJoaquin Reyna, Kyra Fetter, Romeo Ignacio, et al.Pageof 11