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Bioinformatics (Oxford, England)|February 22, 2025
SCEMENT: scalable and memory efficient integration of large-scale single-cell RNA-sequencing dataSriram P Chockalingam, Maneesha Aluru, Srinivas Aluru
Bioinformatics (Oxford, England)|June 8, 2023
MCPNet: a parallel maximum capacity-based genome-scale gene network construction frameworkTony C Pan, Sriram P Chockalingam, Maneesha Aluru, et al.
Bioinformatics (Oxford, England)|December 10, 2021
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networksManeesha Aluru, Harsh Shrivastava, Sriram P Chockalingam, et al.
Microarrays (Basel, Switzerland)|September 23, 2016
Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public RepositoriesSriram Chockalingam, Maneesha Aluru, Srinivas Aluru
Briefings in Bioinformatics|April 12, 2012
A survey of error-correction methods for next-generation sequencingXiao Yang, Sriram P Chockalingam, Srinivas Aluru
Nucleic Acids Research|October 9, 2012
Reverse engineering and analysis of large genome-scale gene networksManeesha Aluru, Jaroslaw Zola, Dan Nettleton, et al.
BMC Bioinformatics|November 18, 2020
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstructionSriram P Chockalingam, Jodh Pannu, Sahar Hooshmand, et al.
Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 4, 2016
ALFRED: A Practical Method for Alignment-Free Distance ComputationSharma V Thankachan, Sriram P Chockalingam, Yongchao Liu, et al.
BMC Bioinformatics|June 16, 2017
A greedy alignment-free distance estimator for phylogenetic inferenceSharma V Thankachan, Sriram P Chockalingam, Yongchao Liu, et al.
The Plant Journal : for Cell and Molecular Biology|January 11, 2011
A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaXiaofei Yu, Lei Li, Jaroslaw Zola, et al.
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