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The Journal of Chemical Physics|March 3, 2011
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: a case study of polymer cyclizationRyan R Cheng, Dmitrii E MakarovThe Journal of Chemical Physics|December 16, 2011
Milestoning with transition memoryAlexander T Hawk, Dmitrii E MakarovThe Journal of Chemical Physics|August 1, 2025
Barrier recrossing dynamics and phenomenological rate equations from single-molecule perspectiveAlexander M Berezhkovskii, Dmitrii E MakarovThe Journal of Chemical Physics|June 15, 2020
Detailed balance for diffusion in a potential with trapping and forward-backward symmetry of trapping time distributionsAlexander M Berezhkovskii, Dmitrii E MakarovThe Journal of Chemical Physics|August 31, 2004
Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometryPai-Chi Li, Dmitrii E MakarovThe Journal of Chemical Physics|November 20, 2004
Translocation of a beta-hairpin-forming peptide through a cylindrical tunnelSerdal Kirmizialtin, Venkat Ganesan, Dmitrii E MakarovThe Journal of Physical Chemistry. B|September 5, 2018
Transition Path Times in Non-Markovian Activated Rate ProcessesEduardo Medina, Rohit Satija, Dmitrii E MakarovThe Journal of Chemical Physics|March 22, 2023
The effect of time resolution on the observed first passage times in diffusive dynamicsKevin Song, Dmitrii E Makarov, Etienne VougaThe Journal of Chemical Physics|January 6, 2006
Computer simulations of the translocation and unfolding of a protein pulled mechanically through a poreLei Huang, Serdal Kirmizialtin, Dmitrii E MakarovJournal of Chemical Theory and Computation|August 26, 2020
Value of Temporal Information When Analyzing Reaction CoordinatesPiao Ma, Ron Elber, Dmitrii E MakarovPageof 16