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The Journal of Chemical Physics|October 23, 2017
Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein foldingRohit Satija, Atanu Das, Dmitrii E MakarovThe Journal of Chemical Physics|July 24, 2024
Information-theoretical limit on the estimates of dissipation by molecular machines using single-molecule fluorescence resonance energy transfer experimentsKevin Song, Dmitrii E Makarov, Etienne VougaThe Journal of Chemical Physics|July 13, 2005
Topography of the free-energy landscape probed via mechanical unfolding of proteinsSerdal Kirmizialtin, Lei Huang, Dmitrii E MakarovThe Journal of Chemical Physics|August 28, 2009
Pitfalls of choosing an order parameter for rare event calculationsBradley M Dickson, Dmitrii E Makarov, Graeme HenkelmanJournal of the American Chemical Society|May 22, 2014
Concerted dihedral rotations give rise to internal friction in unfolded proteinsIgnacia Echeverria, Dmitrii E Makarov, Garegin A PapoianPhysical Biology|June 26, 2008
Critical evaluation of simple network models of protein dynamics and their comparison with crystallographic B-factorsReza Soheilifard, Dmitrii E Makarov, Gregory J RodinThe Journal of Chemical Physics|August 10, 2011
Rigorous coarse-graining for the dynamics of linear systems with applications to relaxation dynamics in proteinsReza Soheilifard, Dmitrii E Makarov, Gregory J RodinThe Journal of Physical Chemistry. B|July 21, 2006
Mechanical unfolding of segment-swapped protein G dimer: results from replica exchange molecular dynamics simulationsPai-Chi Li, Lei Huang, Dmitrii E MakarovProceedings of the National Academy of Sciences of the United States of America|October 22, 2020
Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapesRohit Satija, Alexander M Berezhkovskii, Dmitrii E MakarovBiopolymers|April 24, 2007
Influence of local and residual structures on the scaling behavior and dimensions of unfolded proteinsZhisong Wang, Kevin W Plaxco, Dmitrii E MakarovPageof 16