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Nature Protocols
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August 21, 2020
Ligand binding free-energy calculations with funnel metadynamics
Stefano Raniolo, Vittorio Limongelli
Frontiers in Molecular Biosciences
|
December 30, 2021
Improving Small-Molecule Force Field Parameters in Ligand Binding Studies
Stefano Raniolo, Vittorio Limongelli
The Journal of Chemical Physics
|
August 19, 2025
HEroBM: A deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures
Daniele Angioletti, Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
September 1, 2023
Perspectives on Ligand/Protein Binding Kinetics Simulations: Force Fields, Machine Learning, Sampling, and User-Friendliness
Paolo Conflitti, Stefano Raniolo, Vittorio Limongelli
Communications Chemistry
|
January 25, 2023
Transferring chemical and energetic knowledge between molecular systems with machine learning
Sajjad Heydari, Stefano Raniolo, Lorenzo Livi, et al.
Bioinformatics (Oxford, England)
|
July 16, 2019
DDT - Drug Discovery Tool: a fast and intuitive graphics user interface for docking and molecular dynamics analysis
Simone Aureli, Daniele Di Marino, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
April 17, 2018
The Molecular Mechanism Underlying Ligand Binding to the Membrane-Embedded Site of a G-Protein-Coupled Receptor
Xiaojing Yuan, Stefano Raniolo, Vittorio Limongelli, et al.
Communications Chemistry
|
November 7, 2023
Conformational plasticity and allosteric communication networks explain Shelterin protein TPP1 binding to human telomerase
Simone Aureli, Vince Bart Cardenas, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
September 21, 2019
Ligand Binding, Unbinding, and Allosteric Effects: Deciphering Small-Molecule Modulation of HSP90
Ilda D'Annessa, Stefano Raniolo, Vittorio Limongelli, et al.
Journal of Molecular Biology
|
August 6, 2023
Uracil/H<sup>+</sup> Symport by FurE Refines Aspects of the Rocking-bundle Mechanism of APC-type Transporters
Iliana Zantza, Yiannis Pyrris, Stefano Raniolo, et al.
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of 2
Search research articles
Search
Showing results (1-10 of 15) with videos related to
Sort By:
Page
of 2
Nature Protocols
|
August 21, 2020
Ligand binding free-energy calculations with funnel metadynamics
Stefano Raniolo, Vittorio Limongelli
Frontiers in Molecular Biosciences
|
December 30, 2021
Improving Small-Molecule Force Field Parameters in Ligand Binding Studies
Stefano Raniolo, Vittorio Limongelli
The Journal of Chemical Physics
|
August 19, 2025
HEroBM: A deep equivariant graph neural network for high-fidelity backmapping from coarse-grained to all-atom structures
Daniele Angioletti, Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation
|
September 1, 2023
Perspectives on Ligand/Protein Binding Kinetics Simulations: Force Fields, Machine Learning, Sampling, and User-Friendliness
Paolo Conflitti, Stefano Raniolo, Vittorio Limongelli
Communications Chemistry
|
January 25, 2023
Transferring chemical and energetic knowledge between molecular systems with machine learning
Sajjad Heydari, Stefano Raniolo, Lorenzo Livi, et al.
Bioinformatics (Oxford, England)
|
July 16, 2019
DDT - Drug Discovery Tool: a fast and intuitive graphics user interface for docking and molecular dynamics analysis
Simone Aureli, Daniele Di Marino, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
April 17, 2018
The Molecular Mechanism Underlying Ligand Binding to the Membrane-Embedded Site of a G-Protein-Coupled Receptor
Xiaojing Yuan, Stefano Raniolo, Vittorio Limongelli, et al.
Communications Chemistry
|
November 7, 2023
Conformational plasticity and allosteric communication networks explain Shelterin protein TPP1 binding to human telomerase
Simone Aureli, Vince Bart Cardenas, Stefano Raniolo, et al.
Journal of Chemical Theory and Computation
|
September 21, 2019
Ligand Binding, Unbinding, and Allosteric Effects: Deciphering Small-Molecule Modulation of HSP90
Ilda D'Annessa, Stefano Raniolo, Vittorio Limongelli, et al.
Journal of Molecular Biology
|
August 6, 2023
Uracil/H<sup>+</sup> Symport by FurE Refines Aspects of the Rocking-bundle Mechanism of APC-type Transporters
Iliana Zantza, Yiannis Pyrris, Stefano Raniolo, et al.
Page
of 2