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Bioinformatics (Oxford, England)|June 13, 2012
GraphClust: alignment-free structural clustering of local RNA secondary structuresSteffen Heyne, Fabrizio Costa, Dominic Rose, et al.Bioinformatics (Oxford, England)|June 17, 2014
BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profilesPavankumar Videm, Dominic Rose, Fabrizio Costa, et al.Gigascience|December 7, 2019
GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clusteringMilad Miladi, Eteri Sokhoyan, Torsten Houwaart, et al.Bioinformatics (Oxford, England)|February 5, 2009
Lightweight comparison of RNAs based on exact sequence-structure matchesSteffen Heyne, Sebastian Will, Michael Beckstette, et al.Nature Communications|September 13, 2018
GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledgeFabrizio Costa, Dominic Grün, Rolf BackofenBioinformatics (Oxford, England)|July 2, 2013
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domainsKousik Kundu, Fabrizio Costa, Rolf BackofenNucleic Acids Research|May 7, 2010
Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNACameron Smith, Steffen Heyne, Andreas S Richter, et al.Bioinformatics (Oxford, England)|May 30, 2014
MoDPepInt: an interactive web server for prediction of modular domain-peptide interactionsKousik Kundu, Martin Mann, Fabrizio Costa, et al.Genome Biology|January 24, 2014
GraphProt: modeling binding preferences of RNA-binding proteinsDaniel Maticzka, Sita J Lange, Fabrizio Costa, et al.Bioinformatics (Oxford, England)|October 12, 2012
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approachesNuno D Mendes, Steffen Heyne, Ana T Freitas, et al.Pageof 34