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Scientific Data|February 19, 2026
Annotation of 200 Insect Genomes with BRAKER for Consistent Comparisons across SpeciesStepan Saenko, Katharina J Hoff, Mario Stanke
Current Protocols in Bioinformatics|November 23, 2018
Predicting Genes in Single Genomes with AUGUSTUSKatharina J Hoff, Mario Stanke
Nucleic Acids Research|May 24, 2013
WebAUGUSTUS--a web service for training AUGUSTUS and predicting genes in eukaryotesKatharina J Hoff, Mario Stanke
BMC Bioinformatics|November 10, 2019
VARUS: sampling complementary RNA reads from the sequence read archiveMario Stanke, Willy Bruhn, Felix Becker, et al.
Methods in Molecular Biology (Clifton, N.J.)|April 26, 2019
Whole-Genome Annotation with BRAKERKatharina J Hoff, Alexandre Lomsadze, Mark Borodovsky, et al.
Bioinformatics (Oxford, England)|November 19, 2024
Tiberius: end-to-end deep learning with an HMM for gene predictionLars Gabriel, Felix Becker, Katharina J Hoff, et al.
BMC Bioinformatics|November 26, 2021
TSEBRA: transcript selector for BRAKERLars Gabriel, Katharina J Hoff, Tomáš Brůna, et al.
Bioinformatics (Oxford, England)|November 13, 2015
BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUSKatharina J Hoff, Simone Lange, Alexandre Lomsadze, et al.
NAR Genomics and Bioinformatics|February 12, 2021
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein databaseTomáš Brůna, Katharina J Hoff, Alexandre Lomsadze, et al.
Genome Research|June 12, 2024
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRALars Gabriel, Tomáš Brůna, Katharina J Hoff, et al.
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