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F1000Research|April 10, 2014
Progress and challenges in the computational prediction of gene function using networks: 2012-2013 updatePaul Pavlidis, Jesse GillisNature Communications|November 8, 2023
The transcriptional legacy of developmental stochasticitySara Ballouz, Risa Karakida Kawaguchi, Maria T Pena, et al.Cell|October 19, 2019
High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ SequencingXiaoyin Chen, Yu-Chi Sun, Huiqing Zhan, et al.Biorxiv : the Preprint Server for Biology|April 10, 2023
Preservation of co-expression defines the primary tissue fidelity of human neural organoidsJonathan M Werner, Jesse GillisNature Plants|June 27, 2024
Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant speciesMichael John Passalacqua, Jesse GillisBiorxiv : the Preprint Server for Biology|December 11, 2023
Coexpression enhances cross-species integration of scRNA-seq across diverse plant speciesMichael John Passalacqua, Jesse GillisPlos Biology|December 2, 2024
Meta-analysis of single-cell RNA sequencing co-expression in human neural organoids reveals their high variability in recapitulating primary tissueJonathan M Werner, Jesse GillisBMC Bioinformatics|May 24, 2024
Improving replicability in single-cell RNA-Seq cell type discovery with DuneHector Roux de Bézieux, Kelly Street, Stephan Fischer, et al.Nucleic Acids Research|February 17, 2017
Using predictive specificity to determine when gene set analysis is biologically meaningfulSara Ballouz, Paul Pavlidis, Jesse GillisJournal of Proteomics|February 1, 2014
Bias tradeoffs in the creation and analysis of protein-protein interaction networksJesse Gillis, Sara Ballouz, Paul PavlidisPageof 16